STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB86571.1Tetratricopeptide TPR_2 repeat protein; InterPro IPR001440:IPR013105:IPR013026; KEGG: TPR Domain containing protein; SPTR: A5ZBN8 Putative uncharacterized protein; SMART: Tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein. (532 aa)    
Predicted Functional Partners:
SMB86582.1
COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: dds:Ddes_0566 phosphate binding protein; SPTR: A5ZBN7 Putative uncharacterized protein.
 
     0.903
SMB97168.1
WD-40 repeat protein; InterPro IPR001680; COGs: COG2319 FOG: WD40 repeat; KEGG: scl:sce2686 WD repeat-containing protein; SPTR: A1ZKM8 WD-40 repeat-protein; SMART: WD-40 repeat protein; PFAM: WD-40 repeat protein.
  
 
 0.842
SMC00669.1
Putative sensor with HAMP domain; InterPro IPR003660; KEGG: bja:bll2599 two-component hybrid sensor and regulator; SPTR: A1YBU7 Sensor protein (Fragment); SMART: histidine kinase HAMP region domain protein; PFAM: histidine kinase HAMP region domain protein.
    
 0.833
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.824
SMB85577.1
ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity.
   
 0.820
SMB86623.1
InterPro IPR003400; KEGG: noc:Noc_2674 biopolymer transport protein ExbD/TolR; SPTR: A3FMK2 ExbD1; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
   0.816
SMB86612.1
InterPro IPR003400; KEGG: maq:Maqu_1742 biopolymer transport protein ExbD/TolR; SPTR: A3FMK3 ExbD2; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
   0.813
SMB86631.1
Outer membrane transport energization protein ExbB (TC 2.C.1.1.1); InterPro IPR002898:IPR001917; COGs: COG0811 Biopolymer transport protein; KEGG: hypothetical protein; SPTR: A5ZBN3 Putative uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel.
 
     0.790
SMB98473.1
Multi-sensor hybrid histidine kinase; InterPro IPR004358:IPR003018:IPR013656:IPR013767:IPR003594:IPR0036 61:IPR008207:IPR001789:IPR001610:IPR000014:IPR000700:IPR0 05467; COGs: COG0642 Signal transduction histidine kinase; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; SPTR: A1ZKB7 Sensor protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; ATP-binding region ATPase domain protein; PAS domain containing protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; GA [...]
 
 
 0.758
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.748
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.