STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplCLSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (206 aa)    
Predicted Functional Partners:
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.999
rpsP
PFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16; InterPro IPR000307; COGs: COG0228 Ribosomal protein S16; KEGG: pzu:PHZ_c0116 ribosomal protein S16; SPTR: A3HW21 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.999
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
   
 
 0.999
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
   
 0.999
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.999
rpmA
LSU ribosomal protein L27P; InterPro IPR001684; KEGG: azc:AZC_4093 50S ribosomal protein L27; SPTR: Q11XX3 50S ribosomal protein L27; PFAM: ribosomal protein L27; COGs: COG0211 Ribosomal protein L27; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.999
rpmG
LSU ribosomal protein L33P; InterPro IPR001705; KEGG: predicted protein; SPTR: A0M3L3 50S ribosomal protein L33; PFAM: ribosomal protein L33; TIGRFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.999
rpsB
SSU ribosomal protein S2P; InterPro IPR001865:IPR005706; COGs: COG0052 Ribosomal protein S2; KEGG: gur:Gura_3733 30S ribosomal protein S2; SPTR: A3HWY0 30S ribosomal protein S2; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
 
 
 0.999
rpsI
SSU ribosomal protein S9P; InterPro IPR000754; COGs: COG0103 Ribosomal protein S9; KEGG: rru:Rru_A2151 30S ribosomal protein S9; SPTR: A3HWX9 30S ribosomal protein S9; PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.999
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
 0.999
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.