STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC00678.1YD repeat protein; InterPro IPR001611:IPR006530:IPR003591; COGs: COG4886 Leucine-rich repeat (LRR) protein; KEGG: Os01g0228200; hypothetical protein; SPTR: A1ZVV9 Cell well associated RhsD protein; SMART: leucine-rich repeat-containing protein typical subtype; PFAM: YD repeat-containing protein; leucine-rich repeat protein; TIGRFAM: YD repeat protein. (1983 aa)    
Predicted Functional Partners:
SMC00676.1
YD repeat protein; InterPro IPR006530; KEGG: hypothetical protein; SPTR: A1ZVW2 Putative uncharacterized protein; PFAM: YD repeat-containing protein; TIGRFAM: YD repeat protein.
 
     0.908
SMC00677.1
Hypothetical protein; InterPro IPR001611; KEGG: dal:Dalk_4722 leucine-rich repeat protein; SPTR: A3XN28 Putative uncharacterized protein.
 
    
0.802
SMC00679.1
Hypothetical protein.
       0.773
SMC00680.1
Hypothetical protein; KEGG: cja:CJA_0827 ParB-like nuclease domain; SPTR: A1ZZW0 Cell well associated RhsD protein.
 
    
0.502
SMC00681.1
Hypothetical protein; InterPro IPR010916.
       0.457
SMB98615.1
KEGG: geo:Geob_3789 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; SPTR: A7I538 Putative PAS/PAC sensor protein.
  
 
 0.454
SMB80357.1
InterPro IPR001563; COGs: COG2939 Carboxypeptidase C (cathepsin A); KEGG: amc:MADE_01964 serine carboxypeptidase; SPTR: A0XXP2 Putative uncharacterized protein; PFAM: peptidase S10 serine carboxypeptidase.
  
     0.413
SMB95482.1
Hypothetical protein; KEGG: similar to Alpha-2-macroglobulin precursor (Alpha-2-M); SPTR: A4AWT9 Putative uncharacterized protein.
  
     0.411
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.