STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC00420.1KEGG: cvi:CV_2010 hypothetical protein; SPTR: A1ZLN4 Putative uncharacterized protein. (230 aa)    
Predicted Functional Partners:
SMB98831.1
Nucleotidyltransferase-like; COGs: COG3541 nucleotidyltransferase; KEGG: pmr:PMI1543 hypothetical protein; SPTR: A1ZE54 Putative uncharacterized protein.
  
     0.536
SMB97080.1
KEGG: mlo:mll4420 hypothetical protein; SPTR: A4EYA0 Putative uncharacterized protein.
  
     0.520
SMB98833.1
KEGG: pmr:PMI1543 hypothetical protein; SPTR: A1ZE54 Putative uncharacterized protein.
  
     0.490
SMC00421.1
TonB-dependent receptor; InterPro IPR012910:IPR000531; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; KEGG: ccs:CCNA_00858 TonB-dependent receptor; SPTR: A1ZS37 TonB-dependent receptor, putative; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
       0.482
SMC00419.1
KEGG: geo:Geob_3309 Cna B domain protein; SPTR: A3HVU7 TonB-dependent receptor domain protein.
       0.470
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.