STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB99615.1Hypothetical protein; KEGG: ccs:CCNA_03621 transcriptional regulator, AraC family. (214 aa)    
Predicted Functional Partners:
SMB99614.1
Hypothetical protein; KEGG: ank:AnaeK_1563 ribonuclease Z.
       0.668
SMB98351.1
Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR006311; KEGG: ret:RHE_PF00016 hypothetical protein; SPTR: A1YPR4 Putative uncharacterized protein cetC; PFAM: Cupin 2 conserved barrel domain protein.
 
   0.543
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.491
SMC00669.1
Putative sensor with HAMP domain; InterPro IPR003660; KEGG: bja:bll2599 two-component hybrid sensor and regulator; SPTR: A1YBU7 Sensor protein (Fragment); SMART: histidine kinase HAMP region domain protein; PFAM: histidine kinase HAMP region domain protein.
   
 
 0.463
SMB98540.1
TonB-dependent receptor; InterPro IPR012910:IPR000531; COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; KEGG: bba:Bd2648 outer membrane iron(III) dicitrate receptor; SPTR: A2TVV1 TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
     0.459
SMB98543.1
Hypothetical protein; KEGG: hch:HCH_00181 periplasmic lipoprotein; SPTR: A2TVV9 Putative uncharacterized protein.
  
     0.430
SMC00151.1
Hypothetical protein; SPTR: A1ZC35 Putative uncharacterized protein.
  
     0.401
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.