STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB90473.1COGs: COG4430 conserved hypothetical protein; KEGG: mxa:MXAN_3813 hypothetical protein; SPTR: A3I0E7 Putative uncharacterized protein. (197 aa)    
Predicted Functional Partners:
SMB90458.1
Beta-lactamase; InterPro IPR001466; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; KEGG: aba:Acid345_0612 beta-lactamase; SPTR: A4CM88 Putative uncharacterized protein; PFAM: beta-lactamase.
       0.620
SMB90435.1
YceI family protein; InterPro IPR007372; COGs: COG2353 conserved hypothetical protein; KEGG: bba:Bd2001 YCE I like family protein; SPTR: A2TZA8 YceI like family protein; PFAM: YceI family protein; Belongs to the UPF0312 family.
       0.468
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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