STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC00400.1Polysaccharide deacetylase; InterPro IPR002509; KEGG: met:M446_3306 polysaccharide deacetylase; SPTR: A4BSJ3 Polysaccharide deacetylase; PFAM: polysaccharide deacetylase. (337 aa)    
Predicted Functional Partners:
SMC00401.1
Methyltransferase type 11; InterPro IPR013216; KEGG: met:M446_3307 glycosyl transferase family protein; SPTR: Q8PV71 Putative methyltransferase; PFAM: Methyltransferase type 11.
 
  0.973
SMC00404.1
Glycosyl transferase family 2; InterPro IPR001173; KEGG: ppr:PBPRA1734 hypothetical protein; SPTR: A0YIQ3 Glycosyl transferase, family 2; PFAM: glycosyl transferase family 2.
 
 
  0.788
SMC00402.1
ABC transporter related; InterPro IPR003439:IPR003593; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; KEGG: gur:Gura_2358 ABC transporter related; SPTR: A3XGH7 ABC transporter, ATP-binding protein; SMART: AAA ATPase; PFAM: ABC transporter related.
 
     0.614
SMC00163.1
Polysaccharide deacetylase; InterPro IPR002509; COGs: COG0726 xylanase/chitin deacetylase; KEGG: bsu:BSU38800 hypothetical protein; SPTR: A1HU62 Polysaccharide deacetylase; PFAM: polysaccharide deacetylase.
  
     0.565
SMC00403.1
ABC-2 type transporter; InterPro IPR013526:IPR013525:IPR000412; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; KEGG: sat:SYN_02655 ABC-type polysaccharide/polyol phosphate export systems, permease component; SPTR: A1ZCI2 ABC transporter, permease protein; PFAM: ABC-2 type transporter.
 
     0.560
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.