STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB80732.1Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002198:IPR013968; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: pde:Pden_4932 short-chain dehydrogenase/reductase SDR; SPTR: A3XPW3 3-oxoacyl-(Acyl-carrier protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein. (272 aa)    
Predicted Functional Partners:
uxuA-2
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
  0.967
SMB80739.1
Short-chain dehydrogenase/reductase SDR; InterPro IPR002347:IPR002198:IPR013968; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: pat:Patl_2552 short-chain dehydrogenase/reductase SDR; SPTR: A3XJJ1 KduD; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 
0.952
kduI
4-deoxy-L-threo-5-hexulose uronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
 
 0.907
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 
  0.840
SMB98643.1
PfkB domain protein; InterPro IPR011611; COGs: COG0524 Sugar kinase ribokinase family; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein; SPTR: A4CKH1 Putative kinase; PFAM: PfkB domain protein.
   
  0.820
SMB99820.1
Ribulose-phosphate 3-epimerase; InterPro IPR000056; COGs: COG0036 Pentose-5-phosphate-3-epimerase; KEGG: glo:Glov_3613 ribulose-phosphate 3-epimerase; SPTR: A3HTG8 Ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase.
     
 0.804
SMB91714.1
[Acyl-carrier-protein] S-malonyltransferase; InterPro IPR014043:IPR004410; COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; KEGG: hap:HAPS_0853 malonyl CoA-acyl carrier protein transacylase (MCT); SPTR: A1ZI66 Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.
 
 
 0.769
SMB83449.1
Sugar-phosphate isomerase, RpiB/LacA/LacB family; InterPro IPR003500:IPR004785; COGs: COG0698 Ribose 5-phosphate isomerase RpiB; KEGG: nam:NAMH_1207 ribose 5-phosphate isomerase B; SPTR: A3HU34 Ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.
   
 
 0.746
SMB89221.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  0.725
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.725
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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