STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC00660.1Initiator RepB protein; InterPro IPR000525; COGs: COG5527 Protein involved in initiation of plasmid replication; KEGG: abn:AB57_3921 DNA replication protein; SPTR: A5H870 RepAci1; PFAM: initiator RepB protein. (343 aa)    
Predicted Functional Partners:
SMB85371.1
Hypothetical protein.
  
     0.590
SMB97080.1
KEGG: mlo:mll4420 hypothetical protein; SPTR: A4EYA0 Putative uncharacterized protein.
  
     0.566
SMB95612.1
InterPro IPR007404; PFAM: membrane-bound metal-dependent hydrolase.
  
     0.505
SMB87300.1
KEGG: tgr:Tgr7_3078 hypothetical protein; SPTR: A3I289 Putative uncharacterized protein.
  
     0.465
SMB99422.1
Protein of unknown function DUF559; InterProIPR000212:IPR007569:IPR000938:IPR014016:IPR 014017:IPR006650; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD; SPTR: A1ZN69 UvrD/REP helicase domain protein, putative; PFAM: protein of unknown function DUF559; UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.451
Your Current Organism:
Hymenobacter roseosalivarius
NCBI taxonomy Id: 645990
Other names: H. roseosalivarius DSM 11622, Hymenobacter roseosalivarius AA-718, Hymenobacter roseosalivarius DSM 11622, Hymenobacter roseosalivarius str. DSM 11622, Hymenobacter roseosalivarius strain DSM 11622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.