STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0016Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dsy:DSY0010 hypothetical protein; PFAM: Integrase, catalytic core, phage; SPTR: Putative uncharacterized protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (403 aa)    
Predicted Functional Partners:
Sgly_0079
KEGG: dhd:Dhaf_2423 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.563
Sgly_1285
KEGG: dhd:Dhaf_2665 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.563
Sgly_1047
InterPro IPR014284; KEGG: dhd:Dhaf_3811 RNA polymerase, sigma-24 subunit, ECF subfamily; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
    0.553
Sgly_0080
KEGG: dsy:DSY0070 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.511
Sgly_0017
Hypothetical protein; KEGG: cth:Cthe_0513 DNA binding domain-containing protein; SPTR: Putative uncharacterized protein.
       0.487
Sgly_0018
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
     
 0.466
Sgly_2662
Integrase family protein; InterPro IPR002104; KEGG: shi:Shel_19160 site-specific recombinase XerD; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase family.
  
     0.464
Sgly_0035
KEGG: dsy:DSY0029 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.447
Sgly_0788
Hypothetical protein; KEGG: afl:Aflv_0675 phage-related putative tail protein; SPTR: Phage-related putative tail protein.
  
     0.400
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.