STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0036Sel1 domain protein repeat-containing protein; COGs: COG0790 FOG: TPR repeat SEL1 subfamily; InterPro IPR006597; KEGG: dsy:DSY0030 hypothetical protein; PFAM: Sel1-like; SPTR: Putative uncharacterized protein; PFAM: Sel1 repeat. (958 aa)    
Predicted Functional Partners:
Sgly_1763
AAA ATPase central domain protein; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003959: IPR003593; KEGG: dhd:Dhaf_2725 AAA ATPase central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: probable Rubsico expression protein CbbX; stage V sporulation protein K.
  
 0.903
Sgly_0035
KEGG: dsy:DSY0029 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.894
Sgly_0034
TRAG family protein; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: dsy:DSY0028 hypothetical protein; PFAM: Ti-type conjugative transfer system, TraG-like; SPTR: Putative uncharacterized protein; PFAM: TraG/TraD family.
 
     0.874
Sgly_0033
KEGG: dsy:DSY0027 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: IclR helix-turn-helix domain.
 
     0.868
Sgly_0044
Hypothetical protein; COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: dsy:DSY0038 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF87.
 
     0.849
Sgly_0040
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR000064: IPR016047; KEGG: dsy:DSY0034 hypothetical protein; PFAM: Peptidase M23; NLP/P60; SPTR: Putative uncharacterized protein; PFAM: NlpC/P60 family; Peptidase family M23.
 
     0.825
Sgly_0047
COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: dsy:DSY0044 hypothetical protein; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Cytosine-specific methyltransferase; PFAM: C-5 cytosine-specific DNA methylase.
 
     0.817
Sgly_0037
KEGG: dsy:DSY0031 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.810
Sgly_0068
Peptidase A24A prepilin type IV; InterPro IPR000045; KEGG: dsy:DSY0061 hypothetical protein; PFAM: Peptidase A24A, prepilin type IV; SPTR: Putative uncharacterized protein; PFAM: Type IV leader peptidase family.
 
     0.775
Sgly_0059
KEGG: dsy:DSY0054 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.767
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.