STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0168COGs: COG1982 Arginine/lysine/ornithine decarboxylase; InterPro IPR000310: IPR008286; KEGG: dsy:DSY0121 hypothetical protein; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, C-terminal; PRIAM: Arginine decarboxylase; SPTR: Putative uncharacterized protein; PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain. (483 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
 
 0.831
Sgly_0170
PSP1 domain protein; COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: dhd:Dhaf_0062 PSP1 domain protein; PFAM: PSP1, C-terminal; SPTR: Putative uncharacterized protein; PFAM: PSP1 C-terminal conserved region.
  
    0.789
Sgly_0169
COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: dhd:Dhaf_0061 DNA-directed DNA polymerase; SPTR: DNA-directed DNA polymerase; manually curated.
  
    0.786
Sgly_0171
Protein of unknown function DUF972; COGs: COG4467 conserved hypothetical protein; InterPro IPR010377; KEGG: dsy:DSY0124 hypothetical protein; PFAM: Protein of unknown function DUF972; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF972).
  
    0.777
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.739
Sgly_1762
COGs: COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance; InterPro IPR009651; KEGG: dhd:Dhaf_2723 aluminium resistance family protein; PFAM: Aluminium resistance; SPTR: Aluminium resistance family protein; PFAM: Aluminium resistance protein.
 
   
 0.701
Sgly_0971
Agmatinase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR005925: IPR006035; KEGG: cwo:Cwoe_0990 arginase/agmatinase/formiminoglutamase; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Putative agmatine ureohydrolase; TIGRFAM: Putative agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase; Belongs to the arginase family.
 
  
 0.673
Sgly_0167
Sigma-G inhibitor, Gin; InterPro IPR019700; KEGG: slp:Slip_0044 sigma-G inhibitor, Gin; PFAM: Sigma-G inhibitor, Gin; SPTR: Sigma-G inhibitor, Gin; PFAM: Inhibitor of sigma-G Gin.
       0.622
Sgly_0669
Agmatine deiminase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: cbe:Cbei_1922 agmatine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; PRIAM: Agmatine deiminase; SPTR: Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; TIGRFAM: agmatine deiminase; Belongs to the agmatine deiminase family.
    
 0.595
Sgly_3323
Radical SAM domain protein; COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: dhd:Dhaf_4919 radical SAM domain protein; PFAM: Radical SAM; SPTR: Putative uncharacterized protein; PFAM: Radical SAM superfamily.
 
     0.570
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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