STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0242COGs: COG3949 Uncharacterized membrane protein; KEGG: tjr:TherJR_2224 uncharacterized membrane protein; SPTR: Uncharacterized membrane protein; PFAM: Spore germination protein. (355 aa)    
Predicted Functional Partners:
Sgly_0244
Sporulation protein YtxC; InterPro IPR014199; KEGG: dhd:Dhaf_0184 sporulation protein YtxC; PFAM: Sporulation protein YtxC; SPTR: Putative uncharacterized protein; PFAM: YtxC-like family; TIGRFAM: putative sporulation protein YtxC.
 
     0.702
Sgly_0243
Hypothetical protein; KEGG: cpy:Cphy_3867 methyl-accepting chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer.
       0.546
Sgly_1850
KEGG: tjr:TherJR_0420 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.457
Sgly_1913
InterPro IPR014194; KEGG: dhd:Dhaf_3512 stage III sporulation protein AE; PFAM: Sporulation stage III, protein AE; SPTR: Putative uncharacterized protein; TIGRFAM: Sporulation stage III, protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
    0.415
Sgly_3359
Sporulation protein YyaC; InterPro IPR009665; KEGG: dhd:Dhaf_4946 sporulation protein YyaC; PFAM: Protein of unknown function DUF1256; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF1256; PFAM: Protein of unknown function (DUF1256); TIGRFAM: putative sporulation protein YyaC.
 
    0.413
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.