STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0313KEGG: pop:POPTR_1092635 hypothetical protein; SPTR: Predicted protein. (85 aa)    
Predicted Functional Partners:
Sgly_0312
Hypothetical protein.
       0.773
Sgly_0311
KEGG: lba:Lebu_0403 hypothetical protein; SPTR: Predicted protein.
       0.658
Sgly_0310
Phage repressor like transcriptional regulator, XRE family; COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR001387: IPR019759; KEGG: pjd:Pjdr2_1579 transcriptional regulator, XRE family; PFAM: Peptidase S24/S26A/S26B, conserved region; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; Peptidase S24-like; TIGRFAM: SOS regulatory protein LexA.
       0.443
Sgly_0314
KEGG: mno:Mnod_3582 type I restriction-modification system methyltransferase subunit-like protein; SPTR: Type I restriction-modification system methyltransferase subunit-like protein; PFAM: Methyltransferase small domain; Belongs to the methyltransferase superfamily.
       0.411
Sgly_0309
Restriction endonuclease, type I, R subunit/Type III; COGs: COG4748 conserved hypothetical protein; InterPro IPR007409; KEGG: chu:CHU_0499 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N).
       0.404
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.