STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0336KEGG: shi:Shel_03460 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: phage portal protein, putative, A118 family. (484 aa)    
Predicted Functional Partners:
Sgly_0338
Minor capsid 2 protein; InterPro IPR009319; KEGG: ere:EUBREC_1286 hypothetical protein; PFAM: Phage minor capsid 2; SPTR: Minor capsid 2 protein; PFAM: Phage minor capsid protein 2.
 
    0.979
Sgly_0335
KEGG: cce:Ccel_3297 putative phage terminase, large subunit; SPTR: Putative phage terminase, large subunit; PFAM: Terminase-like family; TIGRFAM: phage terminase, large subunit, PBSX family.
 
    0.898
Sgly_0348
KEGG: ccb:Clocel_3534 putative protein GP15; SPTR: Putative uncharacterized protein; PFAM: Bacteriophage Gp15 protein.
 
    0.853
Sgly_0334
Terminase small subunit; InterPro IPR005335; KEGG: lhk:LHK_01511 hypothetical protein; PFAM: Terminase small subunit; SPTR: Putative uncharacterized protein; PFAM: Terminase small subunit.
 
    0.834
Sgly_0337
Hypothetical protein; KEGG: dre:336563 wu:fb13g09; SPTR: Putative uncharacterized protein.
       0.773
Sgly_0340
KEGG: ele:Elen_2627 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.689
Sgly_0333
Hypothetical protein.
       0.566
Sgly_0339
Hypothetical protein; KEGG: lin:lin0108 putative scaffolding protein; SPTR: Putative uncharacterized protein; PFAM: Phage minor structural protein GP20.
  
    0.496
Sgly_0346
KEGG: cbb:CLD_2453 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.414
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.