STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0480KEGG: mpi:Mpet_1171 hypothetical protein; SPTR: Putative lipoprotein. (629 aa)    
Predicted Functional Partners:
Sgly_0478
VTC domain-containing protein; InterPro IPR018966; KEGG: dhd:Dhaf_2305 hypothetical protein; PFAM: VTC domain; SPTR: VTC domain protein; PFAM: VTC domain.
 
     0.909
Sgly_0479
KEGG: dhd:Dhaf_2306 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.909
Sgly_0476
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: ele:Elen_0372 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
     0.514
Sgly_2044
KEGG: toc:Toce_2214 hypothetical protein; SPTR: Putative lipoprotein.
   
   0.503
Sgly_0040
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR000064: IPR016047; KEGG: dsy:DSY0034 hypothetical protein; PFAM: Peptidase M23; NLP/P60; SPTR: Putative uncharacterized protein; PFAM: NlpC/P60 family; Peptidase family M23.
 
  
 0.455
Sgly_1250
Regulatory protein TetR; InterPro IPR001647; KEGG: dhd:Dhaf_2118 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.450
Sgly_0477
Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: shi:Shel_13160 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Putative uncharacterized protein; PFAM: Response regulator receiver domain; Transcriptional [...]
 
     0.435
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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