STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0520KEGG: dae:Dtox_4208 hypothetical protein; SPTR: Putative uncharacterized protein. (106 aa)    
Predicted Functional Partners:
Sgly_0519
KEGG: bss:BSUW23_09720 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Sgly_0518
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: amt:Amet_4400 XRE family plasmid maintenance system antidote protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Phage transcriptional regulator; PFAM: Helix-turn-helix.
       0.521
Sgly_0521
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: cac:CA_C3639 CRO repressor-like DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: CRO repressor-like DNA-binding protein; PFAM: Helix-turn-helix.
       0.425
Sgly_0522
Hypothetical protein; KEGG: tva:TVAG_193760 DNA-directed RNA polymerase, omega subunit family protein; SPTR: DNA-directed RNA polymerase, omega subunit family protein.
       0.410
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.