STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0539KEGG: mag:amb1767 hypothetical protein; SPTR: Hypothetical cytosolic protein. (136 aa)    
Predicted Functional Partners:
Sgly_0538
COGs: COG4388 Mu-like prophage I protein; InterPro IPR019295; KEGG: sat:SYN_02300 Mu-like prophage FluMu I protein; PFAM: Mu-like prophage I protein; SPTR: Putative uncharacterized protein; PFAM: Mu-like prophage I protein.
 
     0.948
Sgly_0540
COGs: COG4397 Mu-like prophage major head subunit gpT; KEGG: ecg:E2348C_2664 predicted major head subunit protein; SPTR: Putative uncharacterized protein; PFAM: Mu-like prophage major head subunit gpT.
 
     0.926
Sgly_0541
Protein of unknown function DUF1320; COGs: COG4387 Mu-like prophage protein gp36; InterPro IPR009752; KEGG: sat:SYN_02296 Mu-like prophage FluMu protein GP36; PFAM: Protein of unknown function DUF1320; SPTR: Predicted protein; PFAM: Protein of unknown function (DUF1320).
 
     0.919
Sgly_0542
COGs: COG5005 Mu-like prophage protein gpG; InterPro IPR006522; KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein; SPTR: Phage virion morphogeneis protein; TIGRFAM: Phage virion morphogenesis (putative tail completion) protein; PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis (putative tail completion) protein.
 
     0.918
Sgly_0536
Protein of unknown function DUF935; COGs: COG4383 Mu-like prophage protein gp29; InterPro IPR009279; KEGG: sat:SYN_02303 Mu-like prophage FluMu protein GP29; PFAM: Protein of unknown function DUF935; SPTR: Phage head morphogenesis protein; PFAM: Protein of unknown function (DUF935).
 
     0.880
Sgly_0537
Phage head morphogenesis protein, SPP1 gp7 family; COGs: COG2369 conserved hypothetical protein homolog of phage Mu protein gp30; InterPro IPR006528; KEGG: dvu:DVU1119 virion morphogenesis protein; PFAM: Phage putative head morphogenesis protein, SPP1 gp7; SPTR: Phage putative head morphogenesis protein, SPP1 gp7 family; TIGRFAM: Phage putative head morphogenesis protein, SPP1 gp7; PFAM: Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.879
Sgly_2619
COGs: COG4388 Mu-like prophage I protein; InterPro IPR019295; KEGG: sat:SYN_02300 Mu-like prophage FluMu I protein; PFAM: Mu-like prophage I protein; SPTR: Putative uncharacterized protein; PFAM: Mu-like prophage I protein.
 
     0.780
Sgly_2966
COGs: COG4388 Mu-like prophage I protein; InterPro IPR019295; KEGG: sat:SYN_02300 Mu-like prophage FluMu I protein; PFAM: Mu-like prophage I protein; SPTR: Putative uncharacterized protein; PFAM: Mu-like prophage I protein.
 
     0.780
Sgly_3141
COGs: COG4388 Mu-like prophage I protein; InterPro IPR019295; KEGG: sat:SYN_02300 Mu-like prophage FluMu I protein; PFAM: Mu-like prophage I protein; SPTR: Putative uncharacterized protein; PFAM: Mu-like prophage I protein.
 
     0.780
Sgly_2617
COGs: COG4397 Mu-like prophage major head subunit gpT; KEGG: ecg:E2348C_2664 predicted major head subunit protein; SPTR: Putative uncharacterized protein; PFAM: Mu-like prophage major head subunit gpT.
 
     0.779
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.