STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_0934COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: mla:Mlab_1055 hypothetical protein; PFAM: Transglutaminase-like; SPTR: Transglutaminase domain protein; PFAM: Transglutaminase-like superfamily. (199 aa)    
Predicted Functional Partners:
Sgly_1024
GCN5-related N-acetyltransferase; COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: pdi:BDI_1477 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family.
 
     0.732
Sgly_1406
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
   0.652
Sgly_0930
KEGG: dae:Dtox_0634 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.472
Sgly_0933
KEGG: dhd:Dhaf_1258 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.415
Sgly_0935
COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: afl:Aflv_1326 ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter; ABC transporter transmembrane region.
       0.415
Sgly_0936
COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: bha:BH2335 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter transmembrane region; ABC transporter.
       0.415
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.