STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1120UPF0229 protein yeaH; COGs: COG2718 conserved hypothetical protein; HAMAP: UPF0229 protein yeaH; InterPro IPR014230: IPR006698; KEGG: cth:Cthe_1204 hypothetical protein; PFAM: Protein of unknown function DUF444; SPTR: UPF0229 protein CLCAR_0966/CcarbDRAFT_1092; TIGRFAM: Sporulation protein YhbH; PFAM: Protein of unknown function (DUF444); TIGRFAM: sporulation protein YhbH; Belongs to the UPF0229 family. (398 aa)    
Predicted Functional Partners:
Sgly_1119
Putative serine protein kinase, PrkA; COGs: COG2766 Putative Ser protein kinase; InterPro IPR013153: IPR010650; KEGG: clj:CLJU_c04350 putative serine kinase; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA; SPTR: Putative kinase PrkA; PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain.
  
 0.998
Sgly_1121
SpoVR family protein; COGs: COG2719 conserved hypothetical protein; InterPro IPR007390; KEGG: ccb:Clocel_0085 SpoVR family protein; PFAM: Sporulation stage V, protein R; SPTR: SpoVR family protein; PFAM: SpoVR like protein.
 
  
 0.997
Sgly_1118
Hypothetical protein.
       0.558
Sgly_0724
HAD-superfamily hydrolase, subfamily IIB; COGs: COG0380 Trehalose-6-phosphate synthase; InterPro IPR001830: IPR003337: IPR006379; KEGG: gfo:GFO_1041 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; PFAM: Glycosyl transferase, family 20; Trehalose-phosphatase; PRIAM: Alpha,alpha-trehalose-phosphate synthase (UDP-forming)., Trehalose-phosphatase; SPTR: Trehalose-6-phosphate synthase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; Trehalose-phosphatase; PFAM: Trehalose-phosphatase; Glycosyltransferase family 20; TIGRFAM: trehalose-phosphatase; alpha,al [...]
   
    0.541
Sgly_1122
KEGG: btb:BMB171_P0134 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.407
Sgly_1123
Transcriptional regulator, XRE family; COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: clj:CLJU_c19380 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Conserved protein with HTH domain; PFAM: Helix-turn-helix.
       0.407
Sgly_2176
PhoH family protein; COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR006596: IPR003714; KEGG: cth:Cthe_1304 PhoH-like protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; SPTR: PhoH-like protein; PFAM: PhoH-like protein.
   
    0.406
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.