STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1186KEGG: lgs:LEGAS_0965 hypothetical protein; SPTR: Putative uncharacterized protein. (227 aa)    
Predicted Functional Partners:
Sgly_1185
COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: cbe:Cbei_3526 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: Nitroreductase-like; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: Nitroreductase family.
 
     0.820
Sgly_1489
Iron (metal) dependent repressor, DtxR family; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR000835: IPR001367; KEGG: adg:Adeg_0633 iron (metal) dependent repressor, DtxR family; PFAM: HTH transcriptional regulator, MarR; SMART: Iron dependent repressor; HTH transcriptional regulator, MarR; SPTR: Predicted protein; PFAM: Iron dependent repressor, N-terminal DNA binding domain.
  
     0.737
Sgly_1565
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cbi:CLJ_B2268 hypothetical protein; PFAM: Glycosyl transferase, family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
  
     0.699
Sgly_1557
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: cby:CLM_2267 hypothetical protein; PFAM: Glycosyl transferase, family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
  
     0.649
Sgly_1567
Glycosyl transferase family 2; InterPro IPR001173; KEGG: cby:CLM_2267 hypothetical protein; PFAM: Glycosyl transferase, family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
  
     0.643
Sgly_0154
Protein of unknown function DUF1980; COGs: COG3689 membrane protein; InterPro IPR015402; KEGG: dhd:Dhaf_0048 protein of unknown function DUF1980; PFAM: Protein of unknown function DUF1980; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1980).
  
     0.617
Sgly_1234
Regulatory protein TetR; InterPro IPR001647; KEGG: ckr:CKR_0728 hypothetical protein; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.560
Sgly_0155
COGs: COG0701 permease; InterPro IPR005524; KEGG: dhd:Dhaf_0047 permease; PFAM: Protein of unknown function DUF318, transmembrane; SPTR: Permease; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Predicted permease.
  
     0.527
Sgly_1209
InterPro IPR011733; KEGG: tde:TDE2624 hypothetical protein; PFAM: Conserved hypothetical CHP02185, integral membrane; SPTR: Conserved hypothetical integral membrane protein TIGR02185; TIGRFAM: Conserved hypothetical CHP02185, integral membrane; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185.
  
     0.522
Sgly_0152
Amine oxidase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: ccb:Clocel_0454 amine oxidase; PFAM: Amine oxidase; SPTR: Amine oxidase; PFAM: Flavin containing amine oxidoreductase.
 
   
 0.506
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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