Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
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Fusion
Genes that are sometimes fused into single open reading frames.
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Textmining
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
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Coexpression
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Protein of unknown function DUF2089; InterPro IPR018658; KEGG: cpy:Cphy_1605 hypothetical protein; PFAM: Protein of unknown function DUF2089; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function(DUF2089).
0.804
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991 Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
Protein of unknown function DUF2089; InterPro IPR018658; KEGG: cpy:Cphy_1605 hypothetical protein; PFAM: Protein of unknown function DUF2089; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function(DUF2089).
0.804
Sgly_1216
Sgly_1215
Protein of unknown function DUF2089; InterPro IPR018658; KEGG: cpy:Cphy_1605 hypothetical protein; PFAM: Protein of unknown function DUF2089; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function(DUF2089).