STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1220KEGG: sun:SUN_0956 hypothetical protein; SPTR: Ribose ABC transporter, periplasmic ribose-binding protein. (145 aa)    
Predicted Functional Partners:
Sgly_1221
Fibronectin type III domain protein; COGs: COG5263 FOG: Glucan-binding domain (YG repeat); InterPro IPR003961: IPR013378: IPR001119: IPR002479; KEGG: dhd:Dhaf_2434 cell wall/surface repeat protein; PFAM: Fibronectin, type III; Listeria/Bacterioides repeat; S-layer homology domain; Putative cell wall binding repeat; SPTR: Fibronectin type III domain protein; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); S-layer homology domain; Fibronectin type III domain.
       0.664
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.