STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1267InterPro IPR007522; KEGG: ttm:Tthe_0936 CRISPR-associated RAMP protein, Cmr1 family; SPTR: CRISPR-associated RAMP protein, Cmr1 family; TIGRFAM: CRISPR-associated protein TM1795 family, N-terminal; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family. (304 aa)    
Predicted Functional Partners:
Sgly_1270
CRISPR-associated RAMP protein, Cmr4 family; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537: IPR013410; KEGG: cts:Ctha_0944 CRISPR-associated RAMP protein, Cmr4 family; PFAM: Protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Cmr4 family; TIGRFAM: CRISPR-associated RAMP Cmr4; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family.
   
 
 0.923
Sgly_1272
CRISPR-associated RAMP protein, Cmr6 family; COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537: IPR010172; KEGG: ttm:Tthe_0942 CRISPR-associated RAMP protein, Cmr6 family; PFAM: Protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Cmr6 family; TIGRFAM: CRISPR-associated protein, TM1791; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family.
   
 
 0.923
Sgly_1271
CRISPR-associated protein, Cmr5 family; COGs: COG3337 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR010160; KEGG: gyc:GYMC61_1197 CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein, TM1791.1; SPTR: CRISPR-associated protein, Cmr5 family; TIGRFAM: CRISPR-associated protein, TM1791.1; PFAM: CRISPR-associated protein (Cas_Cmr5); TIGRFAM: CRISPR-associated protein, Cmr5 family.
   
 
 0.920
Sgly_1268
CRISPR-associated protein, Crm2 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR013407; KEGG: cts:Ctha_0947 CRISPR-associated protein, Crm2 family; SPTR: CRISPR-associated protein, Crm2 family; TIGRFAM: CRISPR-associated protein Crm2; PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, Crm2 family.
   
 
 0.919
Sgly_1269
CRISPR-associated protein, Cmr3; COGs: COG1769 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR019117; KEGG: ttm:Tthe_0938 CRISPR-associated protein, Cmr3 family; PFAM: CRISPR-associated protein, Cmr3; SPTR: CRISPR-associated protein, Cmr3 family; PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR-associated protein, Cmr3 family.
   
   0.910
Sgly_1266
KEGG: pct:PC1_3262 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.796
Sgly_1273
KEGG: amt:Amet_3921 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.526
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.