STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1350KEGG: tmz:Tmz1t_2753 hypothetical protein; SPTR: Putative uncharacterized protein. (427 aa)    
Predicted Functional Partners:
Sgly_1351
KEGG: ter:Tery_1090 hypothetical protein; SPTR: Putative uncharacterized protein.
     0.990
Sgly_1349
KEGG: mar:MAE_11600 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.949
Sgly_1355
KEGG: hau:Haur_1972 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.910
Sgly_1348
KEGG: ngr:NAEGRDRAFT_54456 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Sgly_1352
Hedgehog/intein hint domain protein; InterPro IPR006141: IPR003587; KEGG: pay:PAU_02970 hypothetical protein; SMART: Hedgehog/intein hint, N-terminal; SPTR: Putative uncharacterized protein; PFAM: Hint module; TIGRFAM: intein N-terminal splicing region.
       0.618
Sgly_1353
KEGG: ccb:Clocel_3248 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.618
Sgly_1347
Peptidase C11 clostripain; InterPro IPR005077; KEGG: bpb:bpr_I2934 cysteine protease C11 family protein; PFAM: Peptidase C11, clostripain; SPTR: Peptidase C11 clostripain; PFAM: Clostripain family.
       0.608
Sgly_1354
Hypothetical protein; KEGG: pfr:PFREUD_18870 Methylmalonyl-CoA carboxytransferase 5S subunit. (transcarboxylase 5S) 505 bp; SPTR: Putative uncharacterized protein.
       0.597
Sgly_1356
Hypothetical protein; KEGG: dan:Dana_GF17556 GF17556 gene product from transcript GF17556-RA; SPTR: Putative uncharacterized protein.
       0.597
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.