STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1392Transposase IS3/IS911 family protein; InterPro IPR002514; KEGG: gtn:GTNG_0758 transposase; PFAM: Transposase IS3/IS911; SPTR: Transposase(AGR_pAT_536p); PFAM: Transposase. (95 aa)    
Predicted Functional Partners:
Sgly_0738
InterPro IPR002514; KEGG: cth:Cthe_2772 transposase IS3/IS911; PFAM: Transposase IS3/IS911; SPTR: Transposase IS3/IS911; manually curated; PFAM: Integrase core domain; Transposase.
 
  
 0.739
Sgly_0096
Transposase protein; InterPro IPR002514; KEGG: cth:Cthe_2772 transposase IS3/IS911; PFAM: Transposase IS3/IS911; SPTR: Transposase IS3/IS911; manually curated; PFAM: Integrase core domain; Transposase.
 
  
 0.737
Sgly_2449
DNA internalization-related competence protein ComEC/Rec2; COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004477: IPR004797; KEGG: dhd:Dhaf_4317 ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; SPTR: ComEC/Rec2-related protein; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
   
  
 0.412
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.