STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1472Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: nth:Nther_0555 radical SAM domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily. (447 aa)    
Predicted Functional Partners:
Sgly_1473
Regulatory protein GntR HTH; COGs: COG2186 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: cpy:Cphy_1313 regulatory protein GntR HTH; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; SPTR: Regulatory protein GntR HTH; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
       0.447
Sgly_1471
KEGG: ccb:Clocel_1261 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.433
Sgly_2091
Ferredoxin; COGs: COG1141 Ferredoxin; KEGG: cac:CA_C3621 ferredoxin; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Protein of unknown function (DUF1271).
  
     0.432
Sgly_2711
AMMECR1 domain protein; COGs: COG2078 conserved hypothetical protein; InterPro IPR004183: IPR002733; KEGG: dsy:DSY1550 hypothetical protein; PFAM: AMMECR1; Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; SPTR: Putative uncharacterized protein; TIGRFAM: AMMECR1; PFAM: AMMECR1; Catalytic LigB subunit of aromatic ring-opening dioxygenase; TIGRFAM: uncharacterized protein, PH0010 family.
  
     0.402
Sgly_1981
COGs: COG1453 oxidoreductase of the aldo/keto reductase family; InterPro IPR001395; KEGG: ckr:CKR_0282 hypothetical protein; PFAM: Aldo/keto reductase; SPTR: Putative uncharacterized protein; PFAM: Aldo/keto reductase family.
  
     0.400
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.