STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1569Helix-turn-helix domain protein; InterPro IPR001387; KEGG: cdf:CD0509 putative conjugative transposon regulatory protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix. (97 aa)    
Predicted Functional Partners:
Sgly_1570
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: lsg:lse_1018 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Hypothetical transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
       0.642
Sgly_1335
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: ctc:CTC00641 transcriptional regulatory protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator; PFAM: Helix-turn-helix.
  
     0.559
Sgly_2665
KEGG: cth:Cthe_1655 hypothetical protein; SPTR: Cytosine-specific methyltransferase; PFAM: Helix-turn-helix.
  
     0.470
Sgly_1571
KEGG: nml:Namu_0614 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily.
  
    0.459
Sgly_1228
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: cdl:CDR20291_0863 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Putative uncharacterized protein; PFAM: Predicted permease.
  
     0.440
Sgly_1308
InterPro IPR011733; KEGG: clo:HMPREF0868_0145 conserved hypothetical protein TIGR02185; PFAM: Conserved hypothetical CHP02185, integral membrane; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical CHP02185, integral membrane; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185.
  
     0.432
Sgly_1217
KEGG: dae:Dtox_0423 transcriptional regulator, AraC family; SPTR: Transcriptional regulator, AraC family.
  
   0.429
Sgly_1172
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: dhd:Dhaf_2022 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
  
     0.416
Sgly_1207
ABC transporter related protein; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: dhd:Dhaf_4772 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter.
  
     0.416
Sgly_1249
Transposase; KEGG: ckl:CKL_3855 transposase; SPTR: Predicted transposase.
  
   0.403
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.