STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_1615Capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702; KEGG: cth:Cthe_2653 hypothetical protein; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Putative uncharacterized protein; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family. (252 aa)    
Predicted Functional Partners:
Sgly_1614
COGs: COG3944 Capsular polysaccharide biosynthesis protein; InterPro IPR003856; KEGG: cth:Cthe_1363 lipopolysaccharide biosynthesis; PFAM: Lipopolysaccharide biosynthesis; SPTR: Putative uncharacterized protein; PFAM: Chain length determinant protein.
 
 0.997
Sgly_1505
COGs: COG3944 Capsular polysaccharide biosynthesis protein; InterPro IPR003856; KEGG: tte:TTE0733 capsular polysaccharide biosynthesis homolog YwqC; PFAM: Lipopolysaccharide biosynthesis; SPTR: Putative uncharacterized protein; PFAM: Chain length determinant protein.
 
 0.975
Sgly_1596
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475: IPR003362; KEGG: cth:Cthe_1349 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.910
Sgly_1503
PHP domain protein; COGs: COG4464 Capsular polysaccharide biosynthesis protein; InterPro IPR004013; KEGG: cbh:CLC_2561 exopolysaccharide biosynthesis protein; PFAM: PHP, C-terminal; SPTR: Putative uncharacterized protein.
 
  
 0.885
Sgly_1515
Undecaprenyl-phosphate galactose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: bcb:BCB4264_A5394 glucosyltransferase EpsB; PFAM: Bacterial sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Glucosyltransferase EpsB; PFAM: Bacterial sugar transferase.
 
  
 0.749
Sgly_2999
Undecaprenyl-phosphate galactose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: dhd:Dhaf_4500 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase.
 
  
 0.748
Sgly_1616
KEGG: dhd:Dhaf_4454 VanZ family protein; SPTR: VanZ family protein; PFAM: VanZ like family.
 
     0.688
Sgly_0165
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880: IPR019752: IPR019456: IPR011766: IPR 011895; KEGG: dhd:Dhaf_0054 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (NADP(+)); SPTR: Pyruvate-flavodoxin oxidoreductase; TIGRFAM: Pyruvate-flavo [...]
  
 
 0.648
hypA
Hydrogenase expression/synthesis HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
   
   0.626
Sgly_3011
Polysaccharide biosynthesis protein CapD; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003781: IPR003869; KEGG: dsy:DSY3347 hypothetical protein; PFAM: Polysaccharide biosynthesis protein CapD-like; CoA-binding; SPTR: Putative uncharacterized protein; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.534
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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