Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| Sgly_0655 | Sgly_0656 | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.743 |
| Sgly_0655 | Sgly_1698 | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.782 |
| Sgly_0655 | Sgly_1861 | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | InterPro IPR010894; KEGG: dhd:Dhaf_3438 stage V sporulation protein AD; PFAM: Stage V sporulation AD; SPTR: Putative uncharacterized protein; TIGRFAM: Stage V sporulation AD; PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD. | 0.775 |
| Sgly_0655 | Sgly_1874 | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Response regulator receiver protein; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.833 |
| Sgly_0655 | Sgly_1875 | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | SpoIVB peptidase; InterPro IPR014219: IPR008763: IPR001478; KEGG: dhd:Dhaf_3482 stage IV sporulation protein B; PFAM: Peptidase S55, SpoIVB; PRIAM: SpoIVB peptidase; SMART: PDZ/DHR/GLGF; SPTR: Putative uncharacterized protein; TIGRFAM: Peptidase S55, sporulation stage IV, protein B; PFAM: SpoIVB peptidase S55; TIGRFAM: stage IV sporulation protein B. | 0.775 |
| Sgly_0655 | Sgly_1917 | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage III sporulation protein AA; COGs: COG3854 conserved hypothetical protein; InterPro IPR014217; KEGG: dhd:Dhaf_3516 stage III sporulation protein AA; SPTR: Stage III sporulation protein AA; TIGRFAM: Sporulation stage III, protein AA; TIGRFAM: stage III sporulation protein AA. | 0.773 |
| Sgly_0655 | Sgly_2090 | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Response regulator receiver protein; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.828 |
| Sgly_0655 | Sgly_3266 | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sporulation transcriptional regulator SpoIIID; InterPro IPR014208; KEGG: dsy:DSY4887 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Sporulation stage III, transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID. | 0.806 |
| Sgly_0656 | Sgly_0655 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.743 |
| Sgly_0656 | Sgly_1698 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.804 |
| Sgly_0656 | Sgly_1861 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | InterPro IPR010894; KEGG: dhd:Dhaf_3438 stage V sporulation protein AD; PFAM: Stage V sporulation AD; SPTR: Putative uncharacterized protein; TIGRFAM: Stage V sporulation AD; PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD. | 0.781 |
| Sgly_0656 | Sgly_1874 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Response regulator receiver protein; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.836 |
| Sgly_0656 | Sgly_1875 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | SpoIVB peptidase; InterPro IPR014219: IPR008763: IPR001478; KEGG: dhd:Dhaf_3482 stage IV sporulation protein B; PFAM: Peptidase S55, SpoIVB; PRIAM: SpoIVB peptidase; SMART: PDZ/DHR/GLGF; SPTR: Putative uncharacterized protein; TIGRFAM: Peptidase S55, sporulation stage IV, protein B; PFAM: SpoIVB peptidase S55; TIGRFAM: stage IV sporulation protein B. | 0.773 |
| Sgly_0656 | Sgly_1917 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage III sporulation protein AA; COGs: COG3854 conserved hypothetical protein; InterPro IPR014217; KEGG: dhd:Dhaf_3516 stage III sporulation protein AA; SPTR: Stage III sporulation protein AA; TIGRFAM: Sporulation stage III, protein AA; TIGRFAM: stage III sporulation protein AA. | 0.773 |
| Sgly_0656 | Sgly_1936 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase, sigma 27/28 subunit, RpsK/SigK; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.488 |
| Sgly_0656 | Sgly_2090 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Response regulator receiver protein; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.824 |
| Sgly_0656 | Sgly_3266 | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sporulation transcriptional regulator SpoIIID; InterPro IPR014208; KEGG: dsy:DSY4887 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Sporulation stage III, transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID. | 0.809 |
| Sgly_1698 | Sgly_0655 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.782 |
| Sgly_1698 | Sgly_0656 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.804 |
| Sgly_1698 | Sgly_1861 | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | InterPro IPR010894; KEGG: dhd:Dhaf_3438 stage V sporulation protein AD; PFAM: Stage V sporulation AD; SPTR: Putative uncharacterized protein; TIGRFAM: Stage V sporulation AD; PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD. | 0.788 |
page 1 of 5