STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2084Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: nth:Nther_0268 peptidase M23; PFAM: Peptidase M23; SPTR: Putative uncharacterized protein; manually curated; PFAM: Peptidase family M23. (282 aa)    
Predicted Functional Partners:
Sgly_0603
COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR007597: IPR001543: IPR012826; KEGG: dhd:Dhaf_4142 CheC, inhibitor of MCP methylation / FliN fusion protein; PFAM: Surface presentation of antigen (SpoA); CheC-like protein; SPTR: CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigens (SPOA); CheC-like family; TIGRFAM: flagellar motor switch protein FliM; flagellar motor switch protein FliN.
   
   0.664
Sgly_2085
Hypothetical protein; KEGG: pac:PPA0380 hyalorunate lyase; SPTR: Putative uncharacterized protein.
       0.655
Sgly_2082
COGs: COG5587 conserved hypothetical protein; InterPro IPR012808; KEGG: ele:Elen_2075 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02453; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453.
       0.425
Sgly_2081
RNA polymerase, sigma subunit, ECF family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627; KEGG: ele:Elen_2074 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; SPTR: Putative uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.415
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.