node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sgly_2116 | Sgly_2119 | Sgly_2116 | Sgly_2119 | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dhd:Dhaf_3624 SpoIID/LytB domain protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain. | 0.506 |
Sgly_2116 | queA | Sgly_2116 | Sgly_2118 | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.725 |
Sgly_2116 | ruvA | Sgly_2116 | Sgly_2121 | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.480 |
Sgly_2116 | ruvB | Sgly_2116 | Sgly_2120 | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.468 |
Sgly_2116 | ruvC | Sgly_2116 | Sgly_2122 | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.442 |
Sgly_2116 | secF-2 | Sgly_2116 | Sgly_2114 | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.751 |
Sgly_2116 | tgt | Sgly_2116 | Sgly_2117 | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...] | 0.803 |
Sgly_2119 | Sgly_2116 | Sgly_2119 | Sgly_2116 | SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dhd:Dhaf_3624 SpoIID/LytB domain protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain. | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | 0.506 |
Sgly_2119 | queA | Sgly_2119 | Sgly_2118 | SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dhd:Dhaf_3624 SpoIID/LytB domain protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain. | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.702 |
Sgly_2119 | ruvA | Sgly_2119 | Sgly_2121 | SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dhd:Dhaf_3624 SpoIID/LytB domain protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain. | Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.620 |
Sgly_2119 | ruvB | Sgly_2119 | Sgly_2120 | SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dhd:Dhaf_3624 SpoIID/LytB domain protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.654 |
Sgly_2119 | ruvC | Sgly_2119 | Sgly_2122 | SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dhd:Dhaf_3624 SpoIID/LytB domain protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain. | Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.599 |
Sgly_2119 | tgt | Sgly_2119 | Sgly_2117 | SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dhd:Dhaf_3624 SpoIID/LytB domain protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain. | tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...] | 0.607 |
queA | Sgly_2116 | Sgly_2118 | Sgly_2116 | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: mta:Moth_1693 protein translocase subunit YajC; PFAM: YajC; SPTR: Protein translocase subunit yajC; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit. | 0.725 |
queA | Sgly_2119 | Sgly_2118 | Sgly_2119 | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | SpoIID/LytB domain protein; COGs: COG2385 Sporulation protein and related protein; InterPro IPR013486: IPR013693; KEGG: dhd:Dhaf_3624 SpoIID/LytB domain protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain. | 0.702 |
queA | queF | Sgly_2118 | Sgly_2830 | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.522 |
queA | queH | Sgly_2118 | Sgly_1717 | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). | 0.799 |
queA | ruvA | Sgly_2118 | Sgly_2121 | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.870 |
queA | ruvB | Sgly_2118 | Sgly_2120 | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.928 |
queA | ruvC | Sgly_2118 | Sgly_2122 | S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.596 |