STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2126COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: ckr:CKR_2160 hypothetical protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ABC transporter; ABC transporter transmembrane region. (581 aa)    
Predicted Functional Partners:
Sgly_2127
COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: ckr:CKR_2161 hypothetical protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein; PFAM: ABC transporter; ABC transporter transmembrane region.
 
    
0.812
Sgly_1209
InterPro IPR011733; KEGG: tde:TDE2624 hypothetical protein; PFAM: Conserved hypothetical CHP02185, integral membrane; SPTR: Conserved hypothetical integral membrane protein TIGR02185; TIGRFAM: Conserved hypothetical CHP02185, integral membrane; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185.
  
     0.759
Sgly_1246
Sulfate-transporting ATPase; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: cce:Ccel_0557 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter.
 
     
0.759
Sgly_1308
InterPro IPR011733; KEGG: clo:HMPREF0868_0145 conserved hypothetical protein TIGR02185; PFAM: Conserved hypothetical CHP02185, integral membrane; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical CHP02185, integral membrane; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185.
  
     0.757
Sgly_1575
Regulatory protein TetR; InterPro IPR001647; KEGG: dhd:Dhaf_4031 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.731
Sgly_1837
Taurine-transporting ATPase; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: tjr:TherJR_1003 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Taurine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter.
 
     
0.723
Sgly_2760
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: ssm:Spirs_3496 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.709
Sgly_2510
Taurine-transporting ATPase; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: tjr:TherJR_1472 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Taurine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter.
 
     
0.706
Sgly_1380
Taurine-transporting ATPase; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: cbe:Cbei_1938 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Taurine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter.
 
     
0.705
Sgly_1210
Regulatory protein TetR; InterPro IPR001647; KEGG: dsy:DSY4740 hypothetical protein; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Putative uncharacterized protein; manually curated; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.673
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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