STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2345N-acetylmuramoyl-L-alanine amidase family 2; COGs: COG2247 Putative cell wall-binding domain; InterPro IPR007253: IPR002502; KEGG: clj:CLJU_c22330 putative cell wall-binding protein; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Putative cell wall binding repeat 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; SPTR: Predicted cell wall binding protein; PFAM: Putative cell wall binding repeat 2; N-acetylmuramoyl-L-alanine amidase. (641 aa)    
Predicted Functional Partners:
Sgly_0636
Beta-galactosidase/beta-glucuronidase-like protein; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; KEGG: dhd:Dhaf_4077 beta-galactosidase/beta-glucuronidase-like protein; SPTR: Putative uncharacterized protein; PFAM: domain.
 
    0.607
Sgly_1848
Plasmid segregation actin-type ATPase ParM; KEGG: dhd:Dhaf_3280 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.557
Sgly_3219
Hypothetical protein; COGs: COG1653 ABC-type sugar transport system periplasmic component; KEGG: dsy:DSY4846 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.533
Sgly_3246
KEGG: dsy:DSY4860 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.516
Sgly_2002
KEGG: dae:Dtox_2058 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.510
Sgly_3008
Transferase hexapeptide repeat containing protein; COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR001451; KEGG: dhd:Dhaf_4502 UDP-3-O-(3-hydroxymyristoyl)-like protein; PFAM: Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-(3-hydroxymyristoyl)-like protein; PFAM: Bacterial transferase hexapeptide (three repeats).
  
     0.480
Sgly_0629
Protein of unknown function DUF342; COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: dhd:Dhaf_4099 protein of unknown function DUF342; PFAM: Protein of unknown function DUF342; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF342).
  
     0.462
Sgly_1567
Glycosyl transferase family 2; InterPro IPR001173; KEGG: cby:CLM_2267 hypothetical protein; PFAM: Glycosyl transferase, family 2; SPTR: Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
  
  
 0.459
Sgly_3003
Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: dsy:DSY3339 hypothetical protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; PFAM: Polysaccharide biosynthesis protein.
  
     0.453
Sgly_2483
Glycosyl transferase family 39; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: hmo:HM1_0452 dolichyl-phosphate-mannose-protein mannosyltransferase, putative; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase, putative.
  
    0.437
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.