STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2409Transcriptional regulator, AbrB family; InterPro IPR007159: IPR006339; KEGG: swo:Swol_1976 regulators of stationary/sporulation gene expression; PFAM: Transcription regulator AbrB/SpoV, predicted; SPTR: Regulators of stationary/sporulation gene expression; TIGRFAM: Transcription regulator AbrB; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family. (91 aa)    
Predicted Functional Partners:
Sgly_1197
Protein of unknown function DUF132; InterPro IPR002850: IPR006596; KEGG: ttm:Tthe_0828 PilT protein domain protein; SMART: Nucleotide binding protein, PINc; SPTR: PilT protein domain protein; TIGRFAM: Protein of unknown function DUF132; TIGRFAM: probable toxin-antitoxin system toxin component, PIN family.
 
    0.817
Sgly_1062
KEGG: tpd:Teth39_1670 addiction module antitoxin; SPTR: Putative uncharacterized protein.
 
   
 0.514
Sgly_1443
Filamentation induced by cAMP protein Fic; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: mbu:Mbur_1635 filamentation induced by cAMP protein Fic; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Putative uncharacterized protein; PFAM: Fic/DOC family.
  
     0.457
Sgly_0666
HEPN domain protein; COGs: COG2250 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: ttm:Tthe_0675 HEPN domain protein; PFAM: HEPN; SMART: HEPN; SPTR: HEPN domain protein; manually curated; PFAM: HEPN domain.
  
     0.444
Sgly_1165
KEGG: cth:Cthe_2132 abortive infection protein, putative; SPTR: Abortive infection protein, putative.
  
     0.434
Sgly_2562
Sortase; KEGG: blj:BLD_1458 sortase; SPTR: Putative uncharacterized protein.
  
     0.425
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.