STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2428KEGG: dhd:Dhaf_4282 sporulation protein YqfC; SPTR: Sporulation protein YqfC; PFAM: YabP family; TIGRFAM: sporulation protein YqfC. (92 aa)    
Predicted Functional Partners:
Sgly_2427
Sporulation protein YqfD; InterPro IPR010690; KEGG: dhd:Dhaf_4281 sporulation protein YqfD; PFAM: Putative stage IV sporulation YqfD; SPTR: Putative uncharacterized protein; TIGRFAM: Putative stage IV sporulation YqfD; PFAM: Putative stage IV sporulation protein YqfD; TIGRFAM: sporulation protein YqfD.
 
  
 0.988
Sgly_2426
PhoH family protein; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: dhd:Dhaf_4280 PhoH family protein; PFAM: PhoH-like protein; SPTR: Putative uncharacterized protein; PFAM: PhoH-like protein.
       0.807
Sgly_1872
Stage II sporulation protein M; InterPro IPR014196: IPR002798; KEGG: dhd:Dhaf_3462 stage II sporulation protein M; PFAM: Protein of unknown function DUF95, transmembrane; SPTR: Putative uncharacterized protein; TIGRFAM: Sporulation stage II, protein M; PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
   
 0.802
Sgly_1916
InterPro IPR014198; KEGG: dhd:Dhaf_3515 stage III sporulation protein SpoAB; PFAM: Sporulation stage III, protein AB; SPTR: Putative uncharacterized protein; PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB.
  
  
 0.801
ybeY
Metalloprotease ybeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.729
Sgly_2425
Metal dependent phosphohydrolase; COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR011621: IPR006674: IPR003607: IPR006675; KEGG: dsy:DSY3110 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, 7TM intracellular domain; Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Putative uncharacterized protein; TIGRFAM: HDIG; PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG.
       0.729
Sgly_0654
Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.708
Sgly_2423
COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: lsg:lse_1381 hypothetical protein; PFAM: Diacylglycerol kinase, prokaryotic; SPTR: DgkA protein; PFAM: Prokaryotic diacylglycerol kinase.
       0.693
Sgly_2422
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.672
era
GTP-binding protein Era-like-protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.660
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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