STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2464Peptidase M50; COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: dhd:Dhaf_4342 peptidase M50; PFAM: Peptidase M50; SPTR: Putative uncharacterized protein; PFAM: Peptidase family M50. (303 aa)    
Predicted Functional Partners:
Sgly_2465
Peptidase M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: dhd:Dhaf_4343 peptidase M23; PFAM: Peptidase M23; SPTR: Putative uncharacterized protein; PFAM: Peptidase family M23.
       0.721
Sgly_2462
Protein of unknown function DUF2344; COGs: COG5011 conserved hypothetical protein; InterPro IPR018768; KEGG: dhd:Dhaf_4340 radical sam protein, putative; PFAM: Protein of unknown function DUF2344; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2344).
       0.654
Sgly_2463
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197: IPR006638; KEGG: dsy:DSY3169 hypothetical protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; PFAM: Radical SAM superfamily.
       0.645
Sgly_1872
Stage II sporulation protein M; InterPro IPR014196: IPR002798; KEGG: dhd:Dhaf_3462 stage II sporulation protein M; PFAM: Protein of unknown function DUF95, transmembrane; SPTR: Putative uncharacterized protein; TIGRFAM: Sporulation stage II, protein M; PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
  
 0.574
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
    0.534
Sgly_0209
Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR010822; KEGG: dsy:DSY0199 hypothetical protein; PFAM: Sporulation stage II, protein E C-terminal; PRIAM: Phosphoprotein phosphatase; SMART: Protein phosphatase 2C-related; SPTR: Putative uncharacterized protein; PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: stage II sporulation protein E.
  
  
 0.528
Sgly_1916
InterPro IPR014198; KEGG: dhd:Dhaf_3515 stage III sporulation protein SpoAB; PFAM: Sporulation stage III, protein AB; SPTR: Putative uncharacterized protein; PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB.
  
  
 0.518
Sgly_1875
SpoIVB peptidase; InterPro IPR014219: IPR008763: IPR001478; KEGG: dhd:Dhaf_3482 stage IV sporulation protein B; PFAM: Peptidase S55, SpoIVB; PRIAM: SpoIVB peptidase; SMART: PDZ/DHR/GLGF; SPTR: Putative uncharacterized protein; TIGRFAM: Peptidase S55, sporulation stage IV, protein B; PFAM: SpoIVB peptidase S55; TIGRFAM: stage IV sporulation protein B.
  
   
 0.497
Sgly_3266
Sporulation transcriptional regulator SpoIIID; InterPro IPR014208; KEGG: dsy:DSY4887 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Sporulation stage III, transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID.
   
  
 0.472
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.463
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.