STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2662Integrase family protein; InterPro IPR002104; KEGG: shi:Shel_19160 site-specific recombinase XerD; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase family. (298 aa)    
Predicted Functional Partners:
Sgly_2661
YcfA family protein; InterPro IPR012933; KEGG: swo:Swol_1661 hypothetical protein; PFAM: YcfA-like; SPTR: Putative uncharacterized protein; PFAM: YcfA-like protein.
       0.508
Sgly_0016
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dsy:DSY0010 hypothetical protein; PFAM: Integrase, catalytic core, phage; SPTR: Putative uncharacterized protein; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
  
     0.464
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
    0.438
Sgly_1471
KEGG: ccb:Clocel_1261 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.421
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.