STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_2912Flavodoxin; COGs: COG0426 flavoprotein; InterPro IPR008254: IPR010087; KEGG: dhd:Dhaf_0741 flavodoxin; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin; TIGRFAM: Flavodoxin, short chain; PFAM: Flavodoxin; TIGRFAM: flavodoxin, short chain. (143 aa)    
Predicted Functional Partners:
Sgly_2911
KEGG: ctc:CTC00431 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.882
Sgly_1549
KEGG: dhd:Dhaf_4684 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.785
Sgly_2913
Hypothetical protein.
       0.697
Sgly_3044
COGs: COG2033 Desulfoferrodoxin; InterPro IPR004462: IPR002742: IPR004793; KEGG: hor:Hore_05310 desulfoferrodoxin; PFAM: Desulfoferrodoxin, ferrous iron-binding domain; Desulfoferrodoxin Dfx; SPTR: Desulfoferrodoxin; TIGRFAM: Desulfoferrodoxin; Desulfoferrodoxin Dfx; Desulfoferrodoxin, ferrous iron-binding domain; PFAM: Desulfoferrodoxin; Desulfoferrodoxin, N-terminal domain; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain.
  
  
 0.495
Sgly_0466
Hemerythrin-like metal-binding protein; COGs: COG2703 Hemerythrin; InterPro IPR012312: IPR012827; KEGG: tte:TTE0259 hemerythrin; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: Hemerythrin; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain.
  
  
 0.474
Sgly_0165
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880: IPR019752: IPR019456: IPR011766: IPR 011895; KEGG: dhd:Dhaf_0054 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (NADP(+)); SPTR: Pyruvate-flavodoxin oxidoreductase; TIGRFAM: Pyruvate-flavo [...]
  
  
 0.432
Sgly_2700
KEGG: dhd:Dhaf_4685 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2325).
 
     0.402
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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