STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_3059Uncharacterized protein family UPF0150; InterPro IPR005357; KEGG: drm:Dred_1551 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0150). (134 aa)    
Predicted Functional Partners:
Sgly_3060
YcfA family protein; InterPro IPR012933; KEGG: clj:CLJU_c31450 hypothetical protein; PFAM: YcfA-like; SPTR: Phage protein; PFAM: YcfA-like protein.
   
 
 0.856
Sgly_0886
YcfA family protein; InterPro IPR012933; KEGG: npu:Npun_R4600 YcfA family protein; PFAM: YcfA-like; SPTR: YcfA family protein; PFAM: YcfA-like protein.
   
 
 0.624
Sgly_2661
YcfA family protein; InterPro IPR012933; KEGG: swo:Swol_1661 hypothetical protein; PFAM: YcfA-like; SPTR: Putative uncharacterized protein; PFAM: YcfA-like protein.
   
 
 0.624
Sgly_2407
KEGG: ttm:Tthe_1878 protein of unknown function UPF0150; SPTR: Putative uncharacterized protein; PFAM: HicB family.
 
     0.581
Sgly_0086
Hypothetical protein; COGs: COG3593 ATP-dependent endonuclease of the OLD family; KEGG: saw:SAHV_0411 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.439
Sgly_3061
LrgB family protein; COGs: COG1346 Putative effector of murein hydrolase; InterPro IPR007300; KEGG: bpu:BPUM_3487 murein hydrolase LrgB; PFAM: LrgB-like protein; SPTR: Membrane protein, putative; PFAM: LrgB-like family; TIGRFAM: conserved hypothetical protein TIGR00659.
       0.420
Sgly_3062
LrgA family protein; COGs: COG1380 Putative effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: bsu:BSU38320 holin-like protein; PFAM: LrgA; SPTR: Holin-like protein; PFAM: LrgA family.
       0.420
Sgly_3058
Regulatory protein MarR; InterPro IPR000835; KEGG: cbe:Cbei_2092 transcriptional regulator, TrmB; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, TrmB; PFAM: MarR family.
       0.415
Sgly_2663
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: dhd:Dhaf_1442 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
  
     0.411
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.