STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_3068Hypothetical protein; COGs: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; KEGG: ttm:Tthe_2499 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2233). (322 aa)    
Predicted Functional Partners:
Sgly_3069
KEGG: ttm:Tthe_2498 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.827
Sgly_0231
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dhd:Dhaf_0177 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
  
     0.639
Sgly_3070
UvrD/REP helicase; COGs: COG3973 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: dhd:Dhaf_2268 ATP-dependent DNA helicase replicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein; PFAM: UvrD/REP helicase.
 
     0.537
Sgly_3067
Phenylacetic acid degradation-related protein; InterPro IPR006683: IPR003736; KEGG: cdl:CDR20291_0846 putative thioesterase; PFAM: Thioesterase superfamily; SPTR: Putative uncharacterized protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
       0.447
Sgly_0440
Transcriptional regulator, LuxR family; COGs: COG3860 conserved hypothetical protein; InterPro IPR000792: IPR018656; KEGG: bcy:Bcer98_1417 hypothetical protein; PFAM: Protein of unknown function DUF2087; Transcription regulator LuxR, C-terminal; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2087); Bacterial regulatory proteins, luxR family.
  
    0.433
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.