STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_3195KEGG: dau:Daud_0754 hypothetical protein; SPTR: Putative uncharacterized protein. (105 aa)    
Predicted Functional Partners:
Sgly_3194
Metal dependent phosphohydrolase; COGs: COG2316 hydrolase (HD superfamily); InterPro IPR006675; KEGG: cce:Ccel_3184 metal dependent phophohydrolase; SPTR: Metal dependent phophohydrolase; TIGRFAM: HDIG; TIGRFAM: uncharacterized domain HDIG.
       0.601
Sgly_2034
InterPro IPR008160; KEGG: cbe:Cbei_2587 triple helix repeat-containing collagen; PFAM: Collagen triple helix repeat; SPTR: Collagen triple helix repeat protein; PFAM: C1q domain; Collagen triple helix repeat (20 copies).
   
   0.539
Sgly_3069
KEGG: ttm:Tthe_2498 hypothetical protein; SPTR: Putative uncharacterized protein.
   
   0.539
Sgly_3196
SNARE associated Golgi protein-like protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: cce:Ccel_1169 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein.
       0.432
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.