STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_3205KEGG: bcy:Bcer98_2036 hypothetical protein; SPTR: Putative uncharacterized protein. (330 aa)    
Predicted Functional Partners:
Sgly_3013
COGs: COG2247 Putative cell wall-binding domain; InterPro IPR008258: IPR007253; KEGG: dsy:DSY3348 hypothetical protein; PFAM: Putative cell wall binding repeat 2; Lytic transglycosylase-like, catalytic; SPTR: Putative uncharacterized protein; PFAM: Transglycosylase SLT domain; Putative cell wall binding repeat 2.
  
     0.664
Sgly_3012
Lytic transglycosylase catalytic; COGs: COG2247 Putative cell wall-binding domain; InterPro IPR008258: IPR007253; KEGG: dsy:DSY3348 hypothetical protein; PFAM: Lytic transglycosylase-like, catalytic; Putative cell wall binding repeat 2; SPTR: Putative uncharacterized protein; PFAM: Transglycosylase SLT domain; Putative cell wall binding repeat 2.
  
     0.650
Sgly_3174
KEGG: clj:CLJU_c17300 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.642
Sgly_1667
KEGG: dae:Dtox_1719 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.640
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.608
Sgly_2098
KEGG: dhd:Dhaf_3035 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.605
Sgly_3246
KEGG: dsy:DSY4860 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.600
Sgly_2996
InterPro IPR007253; KEGG: dsy:DSY3329 hypothetical protein; PFAM: Putative cell wall binding repeat 2; SPTR: Putative uncharacterized protein; PFAM: Putative cell wall binding repeat 2.
  
     0.576
Sgly_2483
Glycosyl transferase family 39; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: hmo:HM1_0452 dolichyl-phosphate-mannose-protein mannosyltransferase, putative; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase, putative.
  
     0.550
Sgly_1848
Plasmid segregation actin-type ATPase ParM; KEGG: dhd:Dhaf_3280 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.515
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.