STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sgly_3323Radical SAM domain protein; COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: dhd:Dhaf_4919 radical SAM domain protein; PFAM: Radical SAM; SPTR: Putative uncharacterized protein; PFAM: Radical SAM superfamily. (490 aa)    
Predicted Functional Partners:
Sgly_3324
KEGG: dhd:Dhaf_4920 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 
 0.985
Sgly_3322
Trimethylamine-N-oxide reductase (cytochrome c); COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963: IPR006656: IPR006657; KEGG: dsy:DSY5019 putative anaerobic dehydrogenase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; PRIAM: Trimethylamine-N-oxide reductase (cytochrome c); SPTR: Putative anaerobic dehydrogenase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdop [...]
       0.757
Sgly_0168
COGs: COG1982 Arginine/lysine/ornithine decarboxylase; InterPro IPR000310: IPR008286; KEGG: dsy:DSY0121 hypothetical protein; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, C-terminal; PRIAM: Arginine decarboxylase; SPTR: Putative uncharacterized protein; PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain.
 
     0.570
Sgly_2399
Protein of unknown function DUF633; COGs: COG2384 SAM-dependent methyltransferase; InterPro IPR006901; KEGG: dsy:DSY3046 hypothetical protein; PFAM: Protein of unknown function DUF633; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF633).
  
     0.504
Sgly_2319
KEGG: dsy:DSY2671 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.491
Sgly_3320
Peptidase S1 and S6 chymotrypsin/Hap; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254: IPR001478; KEGG: dhd:Dhaf_4915 2-alkenal reductase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Putative uncharacterized protein; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF).
 
     0.486
Sgly_3177
COGs: COG1982 Arginine/lysine/ornithine decarboxylase; InterPro IPR000310: IPR008286; KEGG: dsy:DSY0236 hypothetical protein; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, C-terminal; PRIAM: Arginine decarboxylase; SPTR: Putative uncharacterized protein; PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain.
 
     0.483
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
  
   
 0.455
Sgly_3321
Hypothetical protein; COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: dsy:DSY5017 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily.
       0.447
Sgly_3325
KEGG: dhd:Dhaf_4921 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.439
Your Current Organism:
Syntrophobotulus glycolicus
NCBI taxonomy Id: 645991
Other names: S. glycolicus DSM 8271, Syntrophobotulus glycolicus DSM 8271, Syntrophobotulus glycolicus str. DSM 8271, Syntrophobotulus glycolicus strain DSM 8271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.