STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHY89642.1Type IV secretion protein DotU; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)    
Predicted Functional Partners:
OHY89649.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.986
OHY89644.1
Type VI secretion system-associated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
OHY89650.1
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.972
OHY89643.1
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.971
OHY89647.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.971
OHY89637.1
Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.965
OHY89645.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
OHY89648.1
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
OHY89646.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.955
OHY89638.1
Type VI secretion system ImpA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
Your Current Organism:
Aeromonas sobria
NCBI taxonomy Id: 646
Other names: A. sobria, ATCC 43979, Aeromonas hybridization group 7 (HG7), Aeromonas sp. TH002, Aeromonas sp. TH004, Aeromonas sp. TH005, Aeromonas sp. TH018, Aeromonas sp. TH032, Aeromonas sp. TH035, Aeromonas sp. TH037, Aeromonas sp. TH040, Aeromonas sp. TH070, Aeromonas sp. TH082, Aeromonas sp. TH103, Aeromonas sp. TH112, Aeromonas sp. TH116, Aeromonas sp. TH119, CCUG 14830, CECT 4245, CIP 74.33, DSM 19176, JCM 2139, LMG 3783, LMG:3783, NCTC 12979, strain 208
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