STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM39143.1Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family. (406 aa)    
Predicted Functional Partners:
AFM39142.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
  
 0.953
AFM39141.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.950
AFM40949.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
  
 0.802
AFM41775.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
  
 0.802
AFM39250.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
  
 0.796
AFM39251.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.784
AFM43015.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.772
AFM41789.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
  
 0.761
AFM41790.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.746
AFM43017.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
  
 0.740
Your Current Organism:
Desulfosporosinus acidiphilus
NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4
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