STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM40468.1Hypothetical protein. (80 aa)    
Predicted Functional Partners:
AFM40467.1
EAL domain-containing protein; PFAM: EAL domain.
       0.773
AFM40464.1
Hypothetical protein.
       0.651
AFM40465.1
Hypothetical protein.
       0.651
AFM40466.1
Protein of unknown function DUF87.
       0.651
AFM40463.1
Hypothetical protein.
       0.600
AFM40461.1
Hypothetical protein.
       0.520
AFM40462.1
PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457).
       0.520
AFM40469.1
Hypothetical protein.
       0.503
AFM40459.1
Hypothetical protein.
       0.433
AFM40460.1
Hypothetical protein.
       0.433
Your Current Organism:
Desulfosporosinus acidiphilus
NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.