STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM40543.1Cell wall-binding protein; PFAM: Putative cell wall binding repeat 2. (365 aa)    
Predicted Functional Partners:
AFM42652.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, sugar binding domain.
  
    0.758
AFM43422.1
Hypothetical protein.
  
     0.726
AFM42255.1
LysM domain-containing protein; PFAM: LysM domain.
  
    0.694
AFM42257.1
Competence protein A.
  
     0.690
AFM39845.1
PFAM: Protein of unknown function DUF88.
  
     0.666
AFM41874.1
Putative HD superfamily hydrolase; PFAM: HD domain.
  
     0.664
AFM40785.1
Hypothetical protein.
  
     0.643
AFM42012.1
Hypothetical protein.
  
     0.615
AFM43233.1
PFAM: Protein of unknown function (DUF964); Belongs to the UPF0342 family.
  
     0.615
AFM40195.1
Hypothetical protein.
  
     0.603
Your Current Organism:
Desulfosporosinus acidiphilus
NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.