STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM40824.1Hypothetical protein. (118 aa)    
Predicted Functional Partners:
AFM40825.1
Superfamily II DNA helicase; PFAM: RQC domain.
       0.603
AFM40822.1
Phd_YefM; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.527
AFM40821.1
Hypothetical protein; PFAM: Type III restriction enzyme, res subunit.
 
     0.500
AFM43115.1
Putative transcriptional regulator.
  
    0.473
AFM42464.1
Uncharacterized Fe-S center protein; PFAM: Domain of unknown function (DUF362).
  
    0.462
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.426
AFM40826.1
Hypothetical protein; PFAM: SWIM zinc finger.
       0.414
AFM40823.1
PFAM: Plasmid stabilisation system protein; TIGRFAM: addiction module toxin, RelE/StbE family.
       0.401
Your Current Organism:
Desulfosporosinus acidiphilus
NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.