Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AFM40977.1Putative transcriptional regulator. (190 aa)    
Predicted Functional Partners:
AFM40415.1
Hypothetical protein.
 
   
 0.823
AFM41255.1
PFAM: HEAT repeat.
 
     0.783
AFM40259.1
PFAM: Domain of unknown function (DUF1837).
  
     0.771
AFM42756.1
PFAM: Domain of unknown function (DUF1837).
  
     0.771
AFM40260.1
Superfamily II helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
  
     0.759
AFM42952.1
Phage-related tail fiber protein; PFAM: Bacterial Ig-like domain (group 1).
  
     0.759
AFM42755.1
Superfamily II helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
  
     0.755
AFM41803.1
Hypothetical protein.
 
   
 0.754
AFM42929.1
Protein of unknown function DUF87.
  
     0.713
AFM43006.1
Putative Zn peptidase; PFAM: Domain of unknown function (DUF955).
 
  
 0.707
Your Current Organism:
Desulfosporosinus acidiphilus
NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4
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